Detailed information of SNP:
|
SNP ID:
sf0724556795(Gbrowse)
Chromosome: chr07 Position: 24556795 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 67.59% | 32.41% |
| All Indica | 797 | 93.73% | 6.27% |
| All Japonica | 492 | 21.54% | 78.46% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 331 | 29.00% | 71.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724556795 | G->A | INTERGENIC | None |