Detailed information of SNP:
|
SNP ID:
sf0724566329(Gbrowse)
Chromosome: chr07 Position: 24566329 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 64.74% | 35.26% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 22.74% | 77.26% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 31.34% | 68.66% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724566329 | C->T | LOC_Os07g41070(LOC_Os07g41070.1) | UTR_3_PRIME |