Detailed information of SNP:
|
SNP ID:
sf0724587577(Gbrowse)
Chromosome: chr07 Position: 24587577 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.32% | 19.68% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 496 | 63.91% | 36.09% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 89.25% | 10.75% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724587577 | G->A | INTERGENIC | None |