Detailed information of SNP:
|
SNP ID:
sf0724587603(Gbrowse)
Chromosome: chr07 Position: 24587603 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 80.31% | 19.69% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 497 | 63.18% | 36.82% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 50.75% | 49.25% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724587603 | A->G | INTERGENIC | None |