Detailed information of SNP:
|
SNP ID:
sf0724591438(Gbrowse)
Chromosome: chr07 Position: 24591438 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 85.98% | 14.02% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 497 | 63.78% | 36.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 50.45% | 49.55% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724591438 | A->G | LOC_Os07g41090(LOC_Os07g41090.3) | INTRON |
| sf0724591438 | A->G | LOC_Os07g41090(LOC_Os07g41090.1) | INTRON |