Detailed information of SNP:
|
SNP ID:
sf0724608237(Gbrowse)
Chromosome: chr07 Position: 24608237 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 81.57% | 18.43% |
| All Indica | 796 | 93.97% | 6.03% |
| All Japonica | 497 | 62.78% | 37.22% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 50.15% | 49.85% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724608237 | T->C | LOC_Os07g41110(LOC_Os07g41110.1) | SNPs that disrupt stop codons |