Detailed information of SNP:



SNP ID: sf0724641304(Gbrowse)

Chromosome: chr07

Position: 24641304
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 89.41% 10.59%
All Indica799 99.50% 0.50%
All Japonica496 70.97% 29.03%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 98.12% 1.88%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 59.88% 40.12%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 95.12% 4.88%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0724641304 T->C LOC_Os07g41170(LOC_Os07g41170.1) Non-Synonymous SNP