Detailed information of SNP:
|
SNP ID:
sf0724647370(Gbrowse)
Chromosome: chr07 Position: 24647370 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 63.98% | 36.02% |
| All Indica | 798 | 81.20% | 18.80% |
| All Japonica | 497 | 41.65% | 58.35% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 56.72% | 43.28% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724647370 | A->G | INTERGENIC | None |