Detailed information of SNP:
|
SNP ID:
sf0724676678(Gbrowse)
Chromosome: chr07 Position: 24676678 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 58.46% | 41.54% |
| All Indica | 794 | 80.35% | 19.65% |
| All Japonica | 496 | 24.60% | 75.40% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 64.17% | 35.83% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 335 | 34.93% | 65.07% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724676678 | A->G | INTERGENIC | None |