Detailed information of SNP:



SNP ID: sf0724677247(Gbrowse)

Chromosome: chr07

Position: 24677247
Major allele: T

Minor allele: A

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1417 85.82% 14.18%
All Indica799 97.87% 2.13%
All Japonica497 64.79% 35.21%
Aus67 100.00% 0.00%
Indica I375 97.60% 2.40%
Indica II213 96.24% 3.76%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 89.85% 10.15%
Tropical Japonica94 3.19% 96.81%
Japonica Intermediate68 26.47% 73.53%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 77.50% 22.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0724677247 T->A INTERGENIC None