Detailed information of SNP:
|
SNP ID:
sf0724682204(Gbrowse)
Chromosome: chr07 Position: 24682204 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 64.90% | 35.10% |
| All Indica | 796 | 44.22% | 55.78% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 374 | 38.50% | 61.50% |
| Indica II | 212 | 59.43% | 40.57% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724682204 | C->T | INTERGENIC | None |