Detailed information of SNP:
|
SNP ID:
sf0724693171(Gbrowse)
Chromosome: chr07 Position: 24693171 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 88.20% | 11.80% |
| All Indica | 793 | 99.12% | 0.88% |
| All Japonica | 492 | 68.90% | 31.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.19% | 0.81% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 89.82% | 10.18% |
| Tropical Japonica | 91 | 13.19% | 86.81% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724693171 | G->A | INTERGENIC | None |