Detailed information of SNP:
|
SNP ID:
sf0724706554(Gbrowse)
Chromosome: chr07 Position: 24706554 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.93% | 37.07% |
| All Indica | 799 | 80.35% | 19.65% |
| All Japonica | 497 | 35.61% | 64.39% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 68.27% | 31.73% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724706554 | A->G | INTERGENIC | None |