Detailed information of SNP:
|
SNP ID:
sf0724744381(Gbrowse)
Chromosome: chr07 Position: 24744381 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 82.17% | 17.83% |
| All Indica | 793 | 87.64% | 12.36% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 369 | 74.53% | 25.47% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 80.60% | 19.40% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724744381 | A->G | INTERGENIC | None |