Detailed information of SNP:
|
SNP ID:
sf0724759968(Gbrowse)
Chromosome: chr07 Position: 24759968 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 63.53% | 36.47% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 495 | 15.96% | 84.04% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 333 | 21.02% | 78.98% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724759968 | T->A | LOC_Os07g41330(LOC_Os07g41330.1) | INTRON |