Detailed information of SNP:
|
SNP ID:
sf0724767418(Gbrowse)
Chromosome: chr07 Position: 24767418 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 59.42% | 40.58% |
| All Indica | 797 | 80.80% | 19.20% |
| All Japonica | 493 | 33.87% | 66.13% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 68.10% | 31.90% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 334 | 8.98% | 91.02% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724767418 | T->C | LOC_Os07g41350(LOC_Os07g41350.1) | INTRON |