Detailed information of SNP:
|
SNP ID:
sf0724767466(Gbrowse)
Chromosome: chr07 Position: 24767466 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 74.38% | 25.62% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 495 | 51.11% | 48.89% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724767466 | T->C | LOC_Os07g41350(LOC_Os07g41350.1) | INTRON |