Detailed information of SNP:
|
SNP ID:
sf0724770364(Gbrowse)
Chromosome: chr07 Position: 24770364 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 77.79% | 22.21% |
| All Indica | 799 | 83.98% | 16.02% |
| All Japonica | 496 | 67.14% | 32.86% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 69.60% | 30.40% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724770364 | G->A | INTERGENIC | None |