Detailed information of SNP:
|
SNP ID:
sf0724770434(Gbrowse)
Chromosome: chr07 Position: 24770434 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 68.74% | 31.26% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 496 | 33.27% | 66.73% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724770434 | G->A | INTERGENIC | None |