Detailed information of SNP:
|
SNP ID:
sf0724904361(Gbrowse)
Chromosome: chr07 Position: 24904361 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 95.60% | 4.40% |
| All Indica | 778 | 94.99% | 5.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 57 | 61.40% | 38.60% |
| Indica I | 355 | 89.58% | 10.42% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724904361 | C->T | LOC_Os07g41550(LOC_Os07g41550.1) | Non-Synonymous SNP |