Detailed information of SNP:
|
SNP ID:
sf0724938114(Gbrowse)
Chromosome: chr07 Position: 24938114 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 50.87% | 49.13% |
| All Indica | 764 | 84.82% | 15.18% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 358 | 93.30% | 6.70% |
| Indica II | 204 | 79.41% | 20.59% |
| Indica Intermediate | 202 | 75.25% | 24.75% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724938114 | G->A | INTERGENIC | None |