Detailed information of SNP:
|
SNP ID:
sf0724938538(Gbrowse)
Chromosome: chr07 Position: 24938538 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1302 | 95.01% | 4.99% |
| All Indica | 792 | 99.62% | 0.38% |
| All Japonica | 390 | 85.13% | 14.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 206 | 100.00% | 0.00% |
| Temperate Japonica | 288 | 95.83% | 4.17% |
| Tropical Japonica | 64 | 51.56% | 48.44% |
| Japonica Intermediate | 38 | 60.53% | 39.47% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724938538 | C->T | INTERGENIC | None |