Detailed information of SNP:
|
SNP ID:
sf0724944444(Gbrowse)
Chromosome: chr07 Position: 24944444 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1332 | 85.89% | 14.11% |
| All Indica | 790 | 97.09% | 2.91% |
| All Japonica | 422 | 63.03% | 36.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 295 | 73.56% | 26.44% |
| Tropical Japonica | 71 | 40.85% | 59.15% |
| Japonica Intermediate | 56 | 35.71% | 64.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724944444 | C->T | INTERGENIC | None |