Detailed information of SNP:
|
SNP ID:
sf0724952167(Gbrowse)
Chromosome: chr07 Position: 24952167 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.12% | 47.88% |
| All Indica | 798 | 82.83% | 17.17% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 374 | 73.80% | 26.20% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0724952167 | C->T | LOC_Os07g41620(LOC_Os07g41620.1) | INTRON |