Detailed information of SNP:



SNP ID: sf0725043376(Gbrowse)

Chromosome: chr07

Position: 25043376
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 64.17% 35.83%
All Indica799 97.62% 2.38%
All Japonica496 6.45% 93.55%
Aus67 100.00% 0.00%
Indica I375 98.40% 1.60%
Indica II213 96.24% 3.76%
Indica Intermediate211 97.63% 2.37%
Temperate Japonica335 8.06% 91.94%
Tropical Japonica94 1.06% 98.94%
Japonica Intermediate67 5.97% 94.03%
Group VI/Aromatic14 28.57% 71.43%
Intermediate42 64.29% 35.71%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0725043376 A->G INTERGENIC None