Detailed information of SNP:
|
SNP ID:
sf0725045377(Gbrowse)
Chromosome: chr07 Position: 25045377 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 63.42% | 36.58% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725045377 | A->C | LOC_Os07g41810(LOC_Os07g41810.3) | INTRON |
| sf0725045377 | A->C | LOC_Os07g41810(LOC_Os07g41810.4) | INTRON |
| sf0725045377 | A->C | LOC_Os07g41810(LOC_Os07g41810.1) | INTRON |
| sf0725045377 | A->C | LOC_Os07g41810(LOC_Os07g41810.2) | UTR_3_PRIME |