Detailed information of SNP:
|
SNP ID:
sf0725052279(Gbrowse)
Chromosome: chr07 Position: 25052279 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 68.64% | 31.36% |
| All Indica | 799 | 87.73% | 12.27% |
| All Japonica | 497 | 47.89% | 52.11% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 77.33% | 22.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 56.42% | 43.58% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725052279 | A->G | LOC_Os07g41830(LOC_Os07g41830.1) | Non-Synonymous SNP |