Detailed information of SNP:
|
SNP ID:
sf0725075750(Gbrowse)
Chromosome: chr07 Position: 25075750 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 73.49% | 26.51% |
| All Indica | 788 | 65.36% | 34.64% |
| All Japonica | 496 | 95.97% | 4.03% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 370 | 57.30% | 42.70% |
| Indica II | 210 | 73.81% | 26.19% |
| Indica Intermediate | 208 | 71.15% | 28.85% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725075750 | A->G | INTERGENIC | None |