Detailed information of SNP:
|
SNP ID:
sf0725080149(Gbrowse)
Chromosome: chr07 Position: 25080149 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 76.96% | 23.04% |
| All Indica | 785 | 70.19% | 29.81% |
| All Japonica | 495 | 96.97% | 3.03% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 369 | 60.43% | 39.57% |
| Indica II | 208 | 78.85% | 21.15% |
| Indica Intermediate | 208 | 78.85% | 21.15% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725080149 | C->T | INTERGENIC | None |