Detailed information of SNP:
|
SNP ID:
sf0725128146(Gbrowse)
Chromosome: chr07 Position: 25128146 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.60% | 49.40% |
| All Indica | 799 | 14.52% | 85.48% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 24.00% | 76.00% |
| Indica II | 213 | 5.16% | 94.84% |
| Indica Intermediate | 211 | 7.11% | 92.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725128146 | G->A | LOC_Os07g41970(LOC_Os07g41970.1) | SNPs that introduce stop codons |