Detailed information of SNP:
|
SNP ID:
sf0725142746(Gbrowse)
Chromosome: chr07 Position: 25142746 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1342 | 90.54% | 9.46% |
| All Indica | 725 | 85.38% | 14.62% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 356 | 92.98% | 7.02% |
| Indica II | 180 | 78.33% | 21.67% |
| Indica Intermediate | 189 | 77.78% | 22.22% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725142746 | T->G | LOC_Os07g42010(LOC_Os07g42010.1) | Non-Synonymous SNP |