Detailed information of SNP:
|
SNP ID:
sf0725151193(Gbrowse)
Chromosome: chr07 Position: 25151193 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 81.02% | 18.98% |
| All Indica | 779 | 80.74% | 19.26% |
| All Japonica | 494 | 92.11% | 7.89% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 368 | 73.37% | 26.63% |
| Indica II | 207 | 89.37% | 10.63% |
| Indica Intermediate | 204 | 85.29% | 14.71% |
| Temperate Japonica | 332 | 92.77% | 7.23% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725151193 | A->G | INTERGENIC | None |