Detailed information of SNP:
|
SNP ID:
sf0725234453(Gbrowse)
Chromosome: chr07 Position: 25234453 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 59.55% | 40.45% |
| All Indica | 799 | 75.59% | 24.41% |
| All Japonica | 497 | 44.06% | 55.94% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 73.33% | 26.67% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 61.19% | 38.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725234453 | G->A | INTERGENIC | None |