Detailed information of SNP:
|
SNP ID:
sf0725252828(Gbrowse)
Chromosome: chr07 Position: 25252828 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 75.28% | 24.72% |
| All Indica | 796 | 68.34% | 31.66% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 77.81% | 22.19% |
| Indica II | 212 | 40.57% | 59.43% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725252828 | C->T | INTERGENIC | None |