Detailed information of SNP:
|
SNP ID:
sf0725279988(Gbrowse)
Chromosome: chr07 Position: 25279988 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 65.24% | 34.76% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 477 | 7.76% | 92.24% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 320 | 10.94% | 89.06% |
| Tropical Japonica | 92 | 1.09% | 98.91% |
| Japonica Intermediate | 65 | 1.54% | 98.46% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725279988 | C->T | LOC_Os07g42234(LOC_Os07g42234.1) | Non-Synonymous SNP |