Detailed information of SNP:
|
SNP ID:
sf0725310501(Gbrowse)
Chromosome: chr07 Position: 25310501 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.85% | 47.15% |
| All Indica | 799 | 17.77% | 82.23% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 12.27% | 87.73% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 211 | 19.91% | 80.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725310501 | T->A | LOC_Os07g42290(LOC_Os07g42290.1) | UTR_3_PRIME |