Detailed information of SNP:
|
SNP ID:
sf0725311609(Gbrowse)
Chromosome: chr07 Position: 25311609 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 95.26% | 4.74% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 491 | 87.98% | 12.02% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 89.19% | 10.81% |
| Tropical Japonica | 91 | 81.32% | 18.68% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725311609 | A->G | INTERGENIC | None |