Detailed information of SNP:
|
SNP ID:
sf0725324999(Gbrowse)
Chromosome: chr07 Position: 25324999 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 60.45% | 39.55% |
| All Indica | 797 | 92.47% | 7.53% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725324999 | A->G | INTERGENIC | None |