Detailed information of SNP:
|
SNP ID:
sf0725340767(Gbrowse)
Chromosome: chr07 Position: 25340767 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1350 | 90.81% | 9.19% |
| All Indica | 733 | 88.27% | 11.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 366 | 95.63% | 4.37% |
| Indica II | 187 | 77.54% | 22.46% |
| Indica Intermediate | 180 | 84.44% | 15.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725340767 | G->C | INTERGENIC | None |