Detailed information of SNP:
|
SNP ID:
sf0725364369(Gbrowse)
Chromosome: chr07 Position: 25364369 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 94.01% | 5.99% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725364369 | C->T | LOC_Os07g42390(LOC_Os07g42390.3) | INTRON |
| sf0725364369 | C->T | LOC_Os07g42390(LOC_Os07g42390.2) | INTRON |