Detailed information of SNP:
|
SNP ID:
sf0725364808(Gbrowse)
Chromosome: chr07 Position: 25364808 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 64.67% | 35.33% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 15.90% | 84.10% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725364808 | G->C | INTERGENIC | None |