Detailed information of SNP:
|
SNP ID:
sf0725375221(Gbrowse)
Chromosome: chr07 Position: 25375221 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 70.05% | 29.95% |
| All Indica | 799 | 65.58% | 34.42% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 69.60% | 30.40% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725375221 | T->C | INTERGENIC | None |