Detailed information of SNP:
|
SNP ID:
sf0725406367(Gbrowse)
Chromosome: chr07 Position: 25406367 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 94.36% | 5.64% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725406367 | C->T | INTERGENIC | None |