Detailed information of SNP:
|
SNP ID:
sf0725410080(Gbrowse)
Chromosome: chr07 Position: 25410080 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 74.33% | 25.67% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 497 | 31.59% | 68.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 11.94% | 88.06% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725410080 | T->C | LOC_Os07g42440(LOC_Os07g42440.4) | INTRON |
| sf0725410080 | T->C | LOC_Os07g42440(LOC_Os07g42440.2) | INTRON |
| sf0725410080 | T->C | LOC_Os07g42440(LOC_Os07g42440.1) | INTRON |
| sf0725410080 | T->C | LOC_Os07g42440(LOC_Os07g42440.3) | INTRON |