Detailed information of SNP:
|
SNP ID:
sf0725432718(Gbrowse)
Chromosome: chr07 Position: 25432718 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 57.63% | 42.37% |
| All Indica | 772 | 25.91% | 74.09% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 28.21% | 71.79% |
| Indica II | 208 | 20.67% | 79.33% |
| Indica Intermediate | 206 | 27.18% | 72.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725432718 | G->A | LOC_Os07g42490(LOC_Os07g42490.2) | Non-Synonymous SNP |
| sf0725432718 | G->A | LOC_Os07g42490(LOC_Os07g42490.1) | Non-Synonymous SNP |