Detailed information of SNP:
|
SNP ID:
sf0725434517(Gbrowse)
Chromosome: chr07 Position: 25434517 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 82.44% | 17.56% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 497 | 65.59% | 34.41% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 86.57% | 13.43% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725434517 | G->T | INTERGENIC | None |