Detailed information of SNP:
|
SNP ID:
sf0725446809(Gbrowse)
Chromosome: chr07 Position: 25446809 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1162 | 63.51% | 36.49% |
| All Indica | 549 | 29.51% | 70.49% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 257 | 34.63% | 65.37% |
| Indica II | 137 | 27.74% | 72.26% |
| Indica Intermediate | 155 | 22.58% | 77.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725446809 | T->A | INTERGENIC | None |