Detailed information of SNP:
|
SNP ID:
sf0725459666(Gbrowse)
Chromosome: chr07 Position: 25459666 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 56.65% | 43.35% |
| All Indica | 760 | 27.63% | 72.37% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 353 | 33.43% | 66.57% |
| Indica II | 204 | 19.12% | 80.88% |
| Indica Intermediate | 203 | 26.11% | 73.89% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725459666 | T->C | INTERGENIC | None |