Detailed information of SNP:
|
SNP ID:
sf0725488613(Gbrowse)
Chromosome: chr07 Position: 25488613 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 63.13% | 36.87% |
| All Indica | 794 | 36.65% | 63.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 40.59% | 59.41% |
| Indica II | 213 | 12.68% | 87.32% |
| Indica Intermediate | 209 | 54.07% | 45.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725488613 | C->T | LOC_Os07g42590(LOC_Os07g42590.1) | Synonymous |