Detailed information of SNP:
|
SNP ID:
sf0725507769(Gbrowse)
Chromosome: chr07 Position: 25507769 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 94.57% | 5.43% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725507769 | C->G | LOC_Os07g42620(LOC_Os07g42620.1) | INTRON |